finalizeAggregation {DAPAR} | R Documentation |
Method to finalize the aggregation process
finalizeAggregation(obj.pep, pepData, protData, X)
obj.pep |
A peptide object of class |
pepData |
xxxx |
protData |
xxxxx |
X |
An adjacency matrix in which lines and columns correspond respectively to peptides and proteins. |
A protein object of class MSnset
Samuel Wieczorek
require(DAPARdata) data(Exp1_R25_pept) obj.pep <- Exp1_R25_pept[1:1000] pepData <- 2^(Biobase::exprs(obj.pep)) protID <- "Protein.group.IDs" X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE) protData <- inner.mean(pepData,X) finalizeAggregation(obj.pep, pepData, protData, X)