histPValue_HC {DAPAR} | R Documentation |
This function plots a distribution of the p-values.
histPValue_HC(pval_ll, bins = 80, pi0 = 1)
pval_ll |
A list that contains the data |
bins |
An integer that is the number of bins of the histogram. |
pi0 |
A float that is the threshold |
A plot
Samuel Wieczorek
require(DAPARdata) data(Exp1_R25_pept) obj <- Exp1_R25_pept keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj)) obj <- mvFilterFromIndices(obj, keepThat) qData <- Biobase::exprs(obj) sTab <- Biobase::pData(obj) allComp <- limmaCompleteTest(qData,sTab) histPValue_HC(allComp$P_Value[1])