finalizeAggregation {DAPAR}R Documentation

Finalizes the aggregation process

Description

Method to finalize the aggregation process

Usage

finalizeAggregation(obj.pep, pepData, protData, X)

Arguments

obj.pep

A peptide object of class MSnset

pepData

xxxx

protData

xxxxx

X

An adjacency matrix in which lines and columns correspond respectively to peptides and proteins.

Value

A protein object of class MSnset

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
obj.pep <- Exp1_R25_pept[1:1000]
pepData <- 2^(Biobase::exprs(obj.pep))
protID <- "Protein.group.IDs"
X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE)
protData <- inner.mean(pepData,X)
finalizeAggregation(obj.pep, pepData, protData, X)

[Package DAPAR version 1.16.6 Index]