wrapper.compareNormalizationD_HC {DAPAR}R Documentation

Builds a plot from a dataframe

Description

Wrapper to the function that plot to compare the quantitative proteomics data before and after normalization. Same as the function wrapper.compareNormalizationD but uses the package highcharter

Usage

wrapper.compareNormalizationD_HC(objBefore, objAfter,
  condsForLegend = NULL, indData2Show = NULL, ...)

Arguments

objBefore

A dataframe that contains quantitative data before normalization.

objAfter

A dataframe that contains quantitative data after normalization.

condsForLegend

A vector of the conditions (one condition per sample).

indData2Show

A vector of the indices of the columns to show in the plot. The indices are those of indices of the columns int the data.frame qDataBefore.

...

arguments for palette

Value

A plot

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
conds <- Biobase::pData(Exp1_R25_pept)[,"Condition"]
objAfter <- wrapper.normalizeD(Exp1_R25_pept, "QuantileCentering", 
"within conditions")
wrapper.compareNormalizationD_HC(Exp1_R25_pept, objAfter, conds)

[Package DAPAR version 1.16.6 Index]