hc_logFC_DensityPlot {DAPAR} | R Documentation |
This function show the density plots of Fold Change (the same as calculated by limma) for a list of the comparisons of conditions in a differnetial analysis.
hc_logFC_DensityPlot(df_logFC, threshold_LogFC = 0, palette = NULL)
df_logFC |
A dataframe that contains the logFC values |
threshold_LogFC |
The threshold on log(Fold Change) to distinguish between differential and non-differential data |
palette |
xxx |
A highcharts density plot
Samuel Wieczorek
require(DAPARdata) data(Exp1_R25_pept) obj <- Exp1_R25_pept[1:1000] keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj)) obj <- mvFilterFromIndices(obj, keepThat) qData <- Biobase::exprs(obj) sTab <- Biobase::pData(obj) res <- limmaCompleteTest(qData,sTab) hc_logFC_DensityPlot(res$logFC)