heatmapD {DAPAR}R Documentation

This function is a wrapper to heatmap.2 that displays quantitative data in the exprs() table of an object of class MSnSet

Description

Heatmap of the quantitative proteomic data of a MSnSet object

Usage

heatmapD(qData, distance = "euclidean", cluster = "complete",
  dendro = FALSE)

Arguments

qData

A dataframe that contains quantitative data.

distance

The distance used by the clustering algorithm to compute the dendrogram. See help(heatmap.2)

cluster

the clustering algorithm used to build the dendrogram. See help(heatmap.2)

dendro

A boolean to indicate fi the dendrogram has to be displayed

Value

A heatmap

Author(s)

Florence Combes, Samuel Wieczorek

Examples

## Not run: 
require(DAPARdata)
data(Exp1_R25_pept)
obj <- mvFilter(Exp1_R25_pept[1:1000], "wholeMatrix", 6)
qData <- Biobase::exprs(obj)
heatmapD(qData)

## End(Not run)

[Package DAPAR version 1.16.4 Index]