CountPep {DAPAR}R Documentation

Compute the number of peptides used to aggregate proteins

Description

This function computes the number of peptides used to aggregate proteins.

Usage

CountPep(M)

Arguments

M

A "valued" adjacency matrix in which lines and columns correspond respectively to peptides and proteins.

Value

A vector of boolean which is the adjacency matrix but with NA values if they exist in the intensity matrix.

Author(s)

Alexia Dorffer

Examples

library(DAPARdata)
data(Exp1_R25_pept)
protID <- "Protein.group.IDs"
M <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], protID, FALSE)
CountPep(M)

[Package DAPAR version 1.16.4 Index]