wrapper.compareNormalizationD {DAPAR} | R Documentation |
Wrapper to the function that plot to compare the quantitative proteomics data before and after normalization
wrapper.compareNormalizationD(objBefore, objAfter, condsForLegend = NULL, indData2Show = NULL, ...)
objBefore |
A dataframe that contains quantitative data before normalization. |
objAfter |
A dataframe that contains quantitative data after normalization. |
condsForLegend |
A vector of the conditions (one condition per sample). |
indData2Show |
A vector of the indices of the columns to show in the plot. The indices are those of indices of the columns int the data.frame qDataBefore. |
... |
arguments for palette |
A plot
Samuel Wieczorek
require(DAPARdata) data(Exp1_R25_pept) conds <- Biobase::pData(Exp1_R25_pept)[,"Condition"] objAfter <- wrapper.normalizeD(Exp1_R25_pept, "QuantileCentering","within conditions") wrapper.compareNormalizationD(Exp1_R25_pept, objAfter, conds)