histPValue_HC {DAPAR}R Documentation

Distribution of p-values (histogram)

Description

This function plots a distribution of the p-values.

Usage

histPValue_HC(pval_ll, bins = 80, pi0 = 1)

Arguments

pval_ll

A list that contains the data

bins

An integer that is the number of bins of the histogram.

pi0

A float that is the threshold

Value

A plot

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
obj <- Exp1_R25_pept
keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
allComp <- limmaCompleteTest(qData,sTab)
histPValue_HC(allComp$P_Value[1])

[Package DAPAR version 1.16.1 Index]