hc_mvTypePlot2 {DAPAR}R Documentation

Distribution of Observed values with respect to intensity values

Description

This method shows density plots which represents the repartition of Partial Observed Values for each replicate in the dataset. The colors correspond to the different conditions (slot Condition in in the dataset of class MSnSet). The x-axis represent the mean of intensity for one condition and one entity in the dataset (i. e. a protein) whereas the y-axis count the number of observed values for this entity and the considered condition.

Usage

hc_mvTypePlot2(qData, conds, palette = NULL, typeofMV = NULL)

Arguments

qData

A dataframe that contains quantitative data.

conds

A vector of the conditions (one condition per sample).

palette

xxx

typeofMV

xxx

Value

Density plots

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
qData <- Biobase::exprs(Exp1_R25_pept)
conds <- Biobase::pData(Exp1_R25_pept)[,"Condition"]
hc_mvTypePlot2(qData, conds)

[Package DAPAR version 1.16.0 Index]