compareNormalizationD_HC {DAPAR}R Documentation

Builds a plot from a dataframe. Same as compareNormalizationD but uses the library highcharter

Description

Plot to compare the quantitative proteomics data before and after normalization using the library highcharter

Usage

compareNormalizationD_HC(qDataBefore, qDataAfter, condsForLegend = NULL,
  indData2Show = NULL, palette = NULL)

Arguments

qDataBefore

A dataframe that contains quantitative data before normalization.

qDataAfter

A dataframe that contains quantitative data after normalization.

condsForLegend

A vector of the conditions (one condition per sample).

indData2Show

A vector of the indices of the columns to show in the plot. The indices are those of indices of the columns int the data.frame qDataBefore.

palette

xxx

Value

A plot

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
obj <- Exp1_R25_pept[1:1000]
qDataBefore <- Biobase::exprs(obj)
conds <- Biobase::pData(obj)[,"Condition"]
objAfter <- wrapper.normalizeD(obj,"QuantileCentering","within conditions")
compareNormalizationD_HC(qDataBefore, Biobase::exprs(objAfter), conds)

[Package DAPAR version 1.16.0 Index]