calcCoGAPSStat {CoGAPS}R Documentation

calculate gene set statistics

Description

calculates the gene set statistics for each column of A using a Z-score from the elements of the A matrix, the input gene set, and permutation tests

Usage

calcCoGAPSStat(object, GStoGenes, numPerm = 500)

## S4 method for signature 'CogapsResult'
calcCoGAPSStat(object, GStoGenes, numPerm = 500)

Arguments

object

an object of type CogapsResult

GStoGenes

data.frame or list with gene sets

numPerm

number of permutations for null

Value

gene set statistics for each column of A


[Package CoGAPS version 3.4.0 Index]