bindist-class {ChIPpeakAnno}R Documentation

Class "bindist"

Description

An object of class "bindist" represents the relevant fixed-width range of binding site from the feature and number of possible binding site in each range.

Objects from the Class

Objects can be created by calls of the form new("bindist", counts="integer", mids="integer", halfBinSize="integer", bindingType="character", featureType="character").

Slots

counts

vector of "integer" The count number in each binding range

mids

vector of "integer" The center of each range relevant to feature

halfBinSize

"integer", length must be 1. the fixed half-width of each binding range

bindingType

a "character". could be "TSS", "geneEnd"

featureType

a "character". could be "transcript", "exon"

Methods

$, $<-

Get or set the slot of bindist

See Also

preparePool, peakPermTest


[Package ChIPpeakAnno version 3.18.0 Index]