bdp {ChIPpeakAnno} | R Documentation |
Obtain the peaks near bi-directional promoters. Also output percent of peaks near bi-directional promoters.
bdp (peaks, annoData, maxgap=2000L, ...)
peaks |
peak list, GRanges object |
annoData |
annotation data, annoGR object |
maxgap |
maxgap between peak and TSS |
... |
Not used. |
Output is a list of GRanges object of the peaks near bi-directional promoters.
Jianhong Ou
if(Sys.getenv("USER")=="jianhongou"){ library(EnsDb.Hsapiens.v75) data("myPeakList") annoGR <- annoGR(EnsDb.Hsapiens.v75) seqlevelsStyle(myPeakList) <- seqlevelsStyle(annoGR) ChIPpeakAnno:::bdp(myPeakList, annoGR) }