plot_mean_var {CEMiTool} | R Documentation |
This plot returns a scatterplot of the mean by the variance of gene expression. A linear relationship between these values for RNAseq data suggest that an appropriate transformation such as the Variance Stabilizing Transformation should be applied.
plot_mean_var(cem, ...) ## S4 method for signature 'CEMiTool' plot_mean_var(cem, filtered = FALSE)
cem |
Object of class |
... |
Optional parameters |
filtered |
Logical. Whether or not to use filtered data for CEMiTool objects (Default: FALSE). |
Object of class CEMiTool
containing a mean and variance plot
# Get example CEMiTool object data(cem) # Plot mean and variance plot cem <- plot_mean_var(cem) # Check results show_plot(cem, 'mean_var')