plot_consensus {CEMiTool}R Documentation

Plot graph of consensus modules

Description

Plot graph of consensus modules

Usage

plot_consensus(cem_overlap_df, comm_overlap_df, study_num,
  num_sd_cut = 2)

Arguments

cem_overlap_df

Output data.frame from function cem_overlap

comm_overlap_df

Output data.frame from function overlap_community

study_num

Minimum number of studies an edge must be present in for it to be included

num_sd_cut

Number of standard deviations an edge's mean must be above in order to be included in the final plot (Default: 2)

Value

A plot containing the consensus modules of the studies

Examples

## Not run: 
# Run the cemitool function twice on expr dataset. Each time, one sample will be removed
data(expr0)
data(sample_annot)
set.seed(10)
dset1 <- expr0[,-sample(1:ncol(expr0), 1)]
dset2 <- expr0[,-sample(1:ncol(expr0), 1)]
cem1 <- cemitool(dset1, sample_annot, plot=FALSE) 
cem2 <- cemitool(dset2, sample_annot, plot=FALSE) 
cem_overlap_df <- cem_overlap(list(cem1, cem2))
comm_overlap_df <- overlap_community(cem_overlap_df)
plot_consensus(cem_overlap_df, comm_overlap_df, study_num=2)

## End(Not run)

[Package CEMiTool version 1.8.0 Index]