plot_comembership {CEMiTool}R Documentation

Plot module edge co-membership

Description

Plot module edge co-membership

Usage

plot_comembership(cem_overlap_df)

Arguments

cem_overlap_df

Output of function cem_overlap

Value

A plot containing the number of edges present in each fraction of studies

Examples

## Not run:  
# Run the cemitool function five times on expr0 dataset. Each time, 10 samples will be removed.
data(expr0)
data(sample_annot)
set.seed(10)
dset1 <- expr0[,-sample(1:ncol(expr0), 10)]
set.seed(11)
dset2 <- expr0[,-sample(1:ncol(expr0), 10)]
set.seed(12)
dset3 <- expr0[,-sample(1:ncol(expr0), 10)]
set.seed(13)
dset4 <- expr0[,-sample(1:ncol(expr0), 10)]
set.seed(14)
dset5 <- expr0[,-sample(1:ncol(expr0), 10)]

cem1 <- cemitool(dset1, sample_annot, plot=FALSE) 
cem2 <- cemitool(dset2, sample_annot, plot=FALSE)
cem3 <- cemitool(dset3, sample_annot, plot=FALSE) 
cem4 <- cemitool(dset4, sample_annot, plot=FALSE) 
cem5 <- cemitool(dset5, sample_annot, plot=FALSE) 

cem_overlap_df <- cem_overlap(list(cem1, cem2, cem3, cem4, cem5))
plot_comembership(cem_overlap_df)

## End(Not run)

[Package CEMiTool version 1.8.0 Index]