plotMDS {CATALYST}R Documentation

MDS plot

Description

Multi-dimensional scaling (MDS) plot on median marker expressions.

Usage

plotMDS(x, ...)

## S4 method for signature 'daFrame'
plotMDS(x, color_by = "condition")

Arguments

x

a daFrame.

...

optional arguments.

color_by

character string that appears as a column name of rowData(x). Specifies the color coding.

Value

a ggplot object.

Author(s)

Helena Lucia Crowell helena.crowell@uzh.ch

References

Nowicka M, Krieg C, Weber LM et al. CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 2017, 6:748 (doi: 10.12688/f1000research.11622.1)

Examples

data(PBMC_fs, PBMC_panel, PBMC_md)
re <- daFrame(PBMC_fs, PBMC_panel, PBMC_md)
plotMDS(re)


[Package CATALYST version 1.8.6 Index]