outFCS {CATALYST} | R Documentation |
Writes an FCS file for each sample from a dbFrame.
outFCS(x, y, out_path = tempdir(), ...) ## S4 method for signature 'dbFrame,flowFrame' outFCS(x, y, out_path = tempdir(), out_nms = NULL, verbose = TRUE)
x |
a |
y |
a |
out_path |
character string. Specifies in which location output files are to be generated. |
... |
optional arguments. |
out_nms |
an optional character string. Either the name of a 2 column CSV table
with sample IDs and desired output file names, or a vector of length
|
verbose |
if TRUE (default), a warning is given about populations for which no FCS files have been generated. |
Creates a separate FCS file for each barcode population. If out_nms
is NULL (the default), files will be named after the barcode population's ID
in the bc_key
slot of the input dbFrame
;
unassigned events will be written to "unassigned.fcs", and no output
is generated for populations with less than 10 event assignments.
a character of the output path.
Helena Lucia Crowell helena.crowell@uzh.ch
data(sample_ff, sample_key) re <- assignPrelim(x = sample_ff, y = sample_key) re <- estCutoffs(x = re) re <- applyCutoffs(x = re) outFCS(x = re, y = sample_ff)