plotNRS {CATALYST}R Documentation

Plot non-redundancy scores

Description

Plots non-redundancy scores (NRS) by markers in decreasing order.

Usage

plotNRS(x, ...)

## S4 method for signature 'daFrame'
plotNRS(x, markers = NULL, color_by = "condition")

Arguments

x

a daFrame.

...

optional arguments.

markers

character string specifying which markers to include. Defaults to NULL (= all markers). Alternatively, if the colData(x)$marker_class column is specified, can be one of "type", "state", or "none".

color_by

character string. Has to appeara as a column name of rowData(x). Specifies the color coding.

Value

a ggplot object.

Author(s)

Helena Lucia Crowell helena.crowell@uzh.ch

References

Nowicka M, Krieg C, Weber LM et al. CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 2017, 6:748 (doi: 10.12688/f1000research.11622.1)

Examples

data(PBMC_fs, PBMC_panel, PBMC_md)
re <- daFrame(PBMC_fs, PBMC_panel, PBMC_md)
plotNRS(re)


[Package CATALYST version 1.8.3 Index]