concatFCS {CATALYST} | R Documentation |
Concatenates all input data to a single file or object.
concatFCS(x, ...) ## S4 method for signature 'flowSet' concatFCS(x, out_path = NULL, fn = NULL, fn_sep = "_", by_time = TRUE, file_num = FALSE, pars = NULL, desc = NULL) ## S4 method for signature 'character' concatFCS(x, out_path = NULL, fn = NULL, fn_sep = "_", by_time = TRUE, file_num = FALSE) ## S4 method for signature 'list' concatFCS(x, out_path = NULL, fn = NULL, fn_sep = "_", by_time = TRUE, file_num = FALSE)
x |
can be either a |
... |
optional arguments. |
out_path |
character string. If specified, an FCS file of the concatenated data
will be written to this location.
If NULL (default), a |
fn |
a character string to use as the output file name. Defaults to
the file name of the first input FCS file or |
fn_sep |
a character string to use to separate the output file name's prefix from the appendage. |
by_time |
logical. Specifies whether files should be ordered by time of acquisition. |
file_num |
logical. Specifies whether a file number column should be added. |
pars, desc |
optional character vectors of channel names & descriptions to use when merging files. |
a flowFrame
containing measurement intensities
of all input data or a character of the FCS file name.
Helena Lucia Crowell helena.crowell@uzh.ch
data(raw_data) concatFCS(raw_data)