diceSim {BioCor} | R Documentation |
Function to estimate how much two list of genes overlap by looking how much of the nodes are shared. Calculates the Dice similarity
diceSim(g1, g2)
g1, g2 |
A character list with the names of the proteins in each pathway. |
It requires a vector of characters otherwise will return an NA
.
A score between 0 and 1 calculated as the double of the proteins shared by g1 and g2 divided by the number of genes in both groups.
LluĂs Revilla
Used for geneSim
, see conversions
help
page to transform Dice score to Jaccard score.
genes.id2 <- c("52", "11342", "80895", "57654", "548953", "11586", "45985") genes.id1 <- c("52", "11342", "80895", "57654", "58493", "1164", "1163", "4150", "2130", "159") diceSim(genes.id1, genes.id2) diceSim(genes.id2, genes.id2)