ASpliAS-class {ASpli}R Documentation

Class "ASpliAS"

Description

Results of PSI and PIR using experimental junctions

Slots

irPIR:

Reports: event, e1i counts (J1), ie1 counts (J2), j_within (J3), PIR by condition. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

altPSI:

Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

esPSI:

Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

join:

It is a combination of irPIR, altPSI and esPSI tables

junctionsPIR:

PIR metric for each experimental junction using e1i and ie2 counts. Exclusion junction is the junction itself. This output helps to discover new introns as well as new retention events

junctionsPSI:

Given a junction, it is possible to analyze if it shares start, end or both with another junction. If so, is because there is more than one way for/of splicing. Ratio between them along samples is reported.

Author(s)

Estefania Mancini, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz

See Also

Methods: AsDiscover

Accesors: altPSI, irPIR, esPSI, joint, junctionsPIR, junctionsPSI


[Package ASpli version 1.10.0 Index]