ASpliAS-class {ASpli} | R Documentation |
"ASpliAS"
Results of PSI and PIR using experimental junctions
irPIR
:Reports: event, e1i counts (J1), ie1 counts (J2), j_within (J3), PIR by condition. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.
altPSI
:Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.
esPSI
:Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.
join
:It is a combination of irPIR, altPSI and esPSI tables
junctionsPIR
:PIR metric for each experimental junction using e1i and ie2 counts. Exclusion junction is the junction itself. This output helps to discover new introns as well as new retention events
junctionsPSI
:Given a junction, it is possible to analyze if it shares start, end or both with another junction. If so, is because there is more than one way for/of splicing. Ratio between them along samples is reported.
Estefania Mancini, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz
Methods: AsDiscover
Accesors: altPSI
,
irPIR
,
esPSI
,
joint
,
junctionsPIR
,
junctionsPSI