Transcriptogram-class {transcriptogramer} | R Documentation

## Class Transcriptogram

### Description

This S4 class includes methods to use expression values with ordered proteins.

### Slots

`association`

  A data.frame containing two columns, and rows containing proteins names that are connected.

`ordering`

  A data.frame containing two columns, the first one with proteins names, and the second containing its respective position.

`transcriptogramS1`

  A data.frame produced as the result of averaging over all identifiers related to the same protein.

`transcriptogramS2`

  A data.frame produced as the result of averaging over the window.

`radius`

  An integer, non negative, number referring to the window radius.

`status`

  An integer used internally to check the status of the object.

`DE`

  A data.frame of differentially expressed proteins.

### Author(s)

Diego Morais

### See Also

transcriptogramPreprocess, DE, radius, orderingProperties, connectivityProperties, transcriptogramStep1, transcriptogramStep2, differentiallyExpressed, clusterVisualization, clusterEnrichment

[Package transcriptogramer version 1.2.1 Index]