connectivityProperties {transcriptogramer} | R Documentation

## Calculates average graph properties as a function of the node connectivity

### Description

Calculates protein (node) connectivity/degree (k) and network properties as a function of this connectivity, such as: probability of a protein of the graph has degree k, average assortativity of the nodes of degree k, and the average clustering coefficient of the nodes of degree k.

### Usage

    connectivityProperties(object)

    ## S4 method for signature 'Transcriptogram'
    connectivityProperties(object)

### Arguments

`object` | An object of class Transcriptogram.

### Details

The assortativity of a node can be measured by the average degree of its neighbors.

### Value

This method returns a data.frame containing: unique degrees (k) of the nodes of the graph, probability (pk) of a node of the graph has degree k, average assortativity (ak) of the nodes of degree k, and the average clustering coefficient (ck) of the nodes of degree k.

### Author(s)

Diego Morais

### See Also

transcriptogramPreprocess, Hs900, association

### Examples

    transcriptogram <- transcriptogramPreprocess(association, Hs900)
    ## Not run:
    cProperties <- connectivityProperties(transcriptogram)

    ## End(Not run)

[Package transcriptogramer version 1.2.1 Index]