createUniquePeptideDbRds {synapter} | R Documentation

## Create an RDS file for the 'Unique Peptides Database'

### Description

This function creates an RDS file to store the “Unique Peptides Database” for future runs of `synergise` or `Synapter`.

### Usage

    createUniquePeptideDbRds(fastaFile, outputFile = paste0(fastaFile, ".rds"),
      missedCleavages = 0, IisL = FALSE, verbose = interactive())

### Arguments

`fastaFile` | file path of the input fasta file
`outputFile` | file path of the target RDS file; must have the file extension ".rds"
`missedCleavages` | Number of maximal allowed missed cleavages. Default is 0.
`IisL` | If `TRUE` Isoleucin and Leucin are treated as identical. In this case sequences like "ABCI", "ABCL" are removed because they are not unqiue. If `FALSE` (default) "ABCI" and "ABCL" are reported as unique.
`verbose` | If `TRUE` a verbose output is provied.

### Author(s)

Sebastian Gibb <mail@sebastiangibb.de>

### See Also

`Synapter` for details about the cleavage procedure.

### Examples

    ## Not run:
    createUniquePeptideDbRds("uniprot.fasta", "uniprot.fasta.rds")

    ## End(Not run)

[Package synapter version 2.4.1 Index]