zebrafishPromoters24h {seqPattern} | R Documentation

## Zebrafish promoters genomic coordinates

### Description

This is a `data.frame` object that contains genomic coordinates of 12078 promoters active in zebrafish Danio rerio embryos at 24 hours past fertilisation. For each promoter additional information is provided, including position of the dominant (most frequently used) TSS position, number of CAGE tags per million supporting that promoter and the interquantile width of the promoter (width of the central region containing >= 80% of the CAGE tags). The data is taken from Nepal et al. Genome Research 2013, and it is intended to be used for running examples from `seqPattern` package vignette.

### Usage

    data(zebrafishPromoters24h)

### Format

A `data.frame` object

### Value

A `data.frame` object

### References

Nepal et al. (2013) Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis, Genome Research 23(11):1938-1950.

[Package seqPattern version 1.12.0 Index]