zebrafishPromoters {seqPattern} | R Documentation

## Zebrafish promoters sequences

### Description

This is a `DNAStringSet` object that contains sequence of 1000 randomly selected promoters active in 24 hpf zebrafish Danio rerio embryos. The data is taken from Nepal et al. Genome Research 2013, and represents regions flanking 400 bp upstream and 600 bp downstream of the dominant TSS detected by Cap analysis of gene expression (CAGE). It is intended to be used as an input data in running examples from `seqPattern` package help pages.

### Usage

    data(zebrafishPromoters)

### Format

A `DNAStringSet` object

### Value

A `DNAStringSet` object

### References

Nepal et al. (2013) Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis, Genome Research 23(11):1938-1950.

[Package seqPattern version 1.12.0 Index]