sigPway {pathVar} | R Documentation

## A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.

### Description

A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.

### Usage

    sigPway(pvalue_results, pvalue)

### Arguments

`pvalue_results` | `geneDistributionSet2` object and the output of the `pathVarTwoSamples` function or `geneDistributionSet` object and the output of the `pathVarOneSample`.
`pvalue` | the significance level to test.

### Details

This function takes the output `pathVarTwoSamples` or `pathVarOneSample` and returns a `significantPathway2` or `significantPathway` object specifying the significant pathway(s) and which gene(s) belongs to the significant pathway(s).

### Value

A `significantPathway2` object or `significantPathway object` is returned.

### Author(s)

Laurence de Torrente, Samuel Zimmerman, Jessica Mar

### Examples

    results_2samples=pathVarTwoSamplesCont(bock,pways.kegg,groups=as.factor(c(rep(1,10),rep(2,10))),boot=1000,varStat="sd")
    sig_kegg=sigPway(results_2samples,0.05)

[Package pathVar version 1.10.0 Index]