setGate,GatingHierarchy,character,filter-method {flowWorkspace} | R Documentation

## update the gate

### Description

update the population node with a flowCore-compatible gate object

### Usage

    ## S4 method for signature 'GatingHierarchy,character,filter'
    setGate(obj, y, value,
      negated = FALSE, ...)

    ## S4 method for signature 'GatingSet,character,list'
    setGate(obj, y, value, ...)

    ## S4 method for signature 'GatingSet,character,filterList'
    setGate(obj, y, value, ...)

### Arguments

`obj` | `GatingHierarchy` or `GatingSet`
`y` | `character` node name or path
`value` | `filter` or `filterList` or `list` of `filter` objects
`negated` | `logical` see add
`...` | other aguments

### Details

Usually recompute is followed by this call since updating a gate doesn't re-calculating the cell events within the gate automatically. see filterObject for the gate types that are currently supported.

### Examples

    ## Not run:
    rg1 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle")
    rg2 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle")
    flist <- list(rg1,rg2)
    names(flist) <- sampleNames(gs[1:2])
    setGate(gs[1:2], "lymph", flist)
    recompute(gs[1:2], "lymph")

    ## End(Not run)

[Package flowWorkspace version 3.28.2 Index]