plot,GatingSet,missing-method {flowWorkspace} | R Documentation

## plot a gating tree

### Description

Plot a tree/graph representing the GatingHierarchy

### Usage

    ## S4 method for signature 'GatingSet,missing'
    plot(x, y, ...)

    ## S4 method for signature 'GatingSet,character'
    plot(x, y, ...)

### Arguments

`x` | `GatingHierarchy` or `GatingSet`. If `GatingSet`, the first sample will be used to extract gating tree.
`y` | `missing` or `character` specifies.
`...` | other arguments: boolean: `TRUE|FALSE` logical specifying whether to plot boolean gate nodes. Defaults to FALSE. showHidden: `TRUE|FALSE` logical whether to show hidden nodes layout: See `layoutGraph` in package Rgraphviz width: See `layoutGraph` in package Rgraphviz height: See `layoutGraph` in package Rgraphviz fontsize: See `layoutGraph` in package Rgraphviz labelfontsize: See `layoutGraph` in package Rgraphviz fixedsize: See `layoutGraph` in package Rgraphviz

### Examples

    ## Not run:
     #gs is a GatingSet
     plot(gs) # the same as plot(gs[[1]])
     #plot a substree rooted from 'CD4'
     plot(gs, "CD4")

    ## End(Not run)

[Package flowWorkspace version 3.28.2 Index]