getStats {flowWorkspace} | R Documentation

## Exact MFI from populations(or nodes) for all the markers

### Description

It calculates the MFI for each marker.

### Usage

    getStats(x, ...)

    ## S3 method for class 'GatingSetList'
    getStats(x, ...)

    ## S3 method for class 'GatingSet'
    getStats(x, ...)

    ## S3 method for class 'GatingHierarchy'
    getStats(x, nodes = NULL, type = "count",
      inverse.transform = FALSE, stats.fun.arg = list(), ...)

### Arguments

`x` | a GatingSet or GatingHierarchy
`...` | arguments passed to getNodes method.
`nodes` | the character vector specifies the populations of interest. default is all available nodes
`type` | the character vector specifies the type of pop stats or a function used to compute population stats. when character, it is expected to be either "count" or "percent". Default is "count" (total number of events in the populations). when a function, it takes a flowFrame object through 'fr' argument and return the stats as a named vector.
`inverse.transform` | logical flag . Whether inverse transform the data before computing the stats.
`stats.fun.arg` | a list of arguments passed to ‘type' when ’type' is a function.

### Value

a data.table that contains MFI values for each marker per column along with 'pop' column and 'sample' column (when used on a 'GatingSet')

[Package flowWorkspace version 3.28.2 Index]