summary {edge} | R Documentation

## Summary of deFit and deSet

### Description

Summary of `deFit` and `deSet` objects.

### Usage

    summary(object, ...)

    ## S4 method for signature 'deFit'
    summary(object)

    ## S4 method for signature 'deSet'
    summary(object, ...)

### Arguments

`object` | `S4 object`: `deSet`
`...` | additional parameters

### Value

Summary of `deSet` object

### Author(s)

John Storey, Andrew Bass

### Examples

    # import data
    library(splines)
    data(kidney)
    age <- kidney$age
    sex <- kidney$sex
    kidexpr <- kidney$kidexpr
    cov <- data.frame(sex = sex, age = age)

    # create models
    null_model <- ~sex
    full_model <- ~sex + ns(age, df = 4)

    # create deSet object from data
    de_obj <- build_models(data = kidexpr, cov = cov, null.model = null_model,
    full.model = full_model)

    # get summary
    summary(de_obj)

    # run odp and summarize
    de_odp <- odp(de_obj, bs.its= 20)
    summary(de_odp)

[Package edge version 2.12.2 Index]