deFit-class {edge} | R Documentation

## The differential expression class for the model fits

### Description

Object returned from `fit_models` containing information regarding the model fits for the experiment.

### Slots

`fit.full`

  `matrix`: containing fitted values for the full model.

`fit.null`

  `matrix`: containing fitted values for the null model.

`res.full`

  `matrix`: the residuals of the full model.

`res.null`

  `matrix`: the residuals of the null model.

`dH.full`

  `vector`: contains diagonal elements in the projection matrix for the full model.

`beta.coef`

  `matrix`: fitted coefficients for the full model.

`stat.type`

  `string`: information on the statistic of interest. Currently, the only options are “lrt” and “odp”.

### Methods

`fitNull(deFit)`

  Access fitted data from null model.

`fitFull(deFit)`

  Access fitted data from full model.

`resNull(deFit)`

  Access residuals from null model fit.

`resFull(deFit)`

  Access residuals from full model fit.

`betaCoef(deFit)`

  Access beta coefficients in linear model.

`sType(deFit)`

  Access statistic type of model fitting utilized in function.

### Author(s)

John Storey, Jeffrey Leek, Andrew Bass

[Package edge version 2.12.2 Index]