BeadLevelList-class {beadarray} | R Documentation

## Class "BeadLevelList"

### Description

A class for storing red and green channel foreground and background intensities from an Illumina experiment.

### Objects from the Class

Objects can be created by calls of the form `new("BeadLevelList")`, but are usually created by `readIllumina`.

### Slots/List Components

Objects of this class contain the following slots

`beadData`: | an environment for storing the raw bead-level data. Each row correspond to a bead and columns the data.
`phenoData`: | an 'AnnotatedDataFrame' containing experimental information.
`arrayInfo`: | a list containing array information.
`annotation`: | character storing annotation package information.

### Methods

`arrayNames(object,arrays=NULL)`

  Returns the strip/array names from a `BeadLevelList` object for selected `arrays`

`getArrayData(object,what="G",log=TRUE)`

  Retrieves the `what` intensities on the `log` scale from the `BeadLevelList`

### Author(s)

Mark Dunning and Matt Ritchie

[Package beadarray version 2.30.0 Index]