$,LinearEmbeddingMatrix-method	LEM-getset
$<-,LinearEmbeddingMatrix-method	LEM-getset
as.matrix,LinearEmbeddingMatrix-method	LEM-getset
cbind,LinearEmbeddingMatrix-method	LEM-combine
cbind,SingleCellExperiment-method	SCE-combine
clearSizeFactors	sizeFactors
clearSizeFactors,SingleCellExperiment-method	sizeFactors
clearSpikes	isSpike
clearSpikes,SingleCellExperiment-method	isSpike
coerce,SummarizedExperiment,SingleCellExperiment-method	SingleCellExperiment
colData,SingleCellExperiment-method	SCE-misc
counts	namedAssays
counts,SingleCellExperiment-method	namedAssays
counts<-	namedAssays
counts<-,SingleCellExperiment-method	namedAssays
cpm	namedAssays
cpm,SingleCellExperiment-method	namedAssays
cpm<-	namedAssays
cpm<-,SingleCellExperiment-method	namedAssays
dim,LinearEmbeddingMatrix-method	LEM-getset
dimnames,LinearEmbeddingMatrix-method	LEM-getset
dimnames<-,LinearEmbeddingMatrix,ANY-method	LEM-getset
dimnames<-,LinearEmbeddingMatrix-method	LEM-getset
factorData	LEM-getset
factorData,LinearEmbeddingMatrix-method	LEM-getset
factorData<-	LEM-getset
factorData<-,LinearEmbeddingMatrix-method	LEM-getset
featureLoadings	LEM-getset
featureLoadings,LinearEmbeddingMatrix-method	LEM-getset
featureLoadings<-	LEM-getset
featureLoadings<-,LinearEmbeddingMatrix-method	LEM-getset
isSpike	isSpike
isSpike,SingleCellExperiment,character-method	isSpike
isSpike,SingleCellExperiment,missing-method	isSpike
isSpike,SingleCellExperiment,NULL-method	isSpike
isSpike<-	isSpike
isSpike<-,SingleCellExperiment,character-method	isSpike
isSpike<-,SingleCellExperiment,missing-method	isSpike
isSpike<-,SingleCellExperiment,NULL-method	isSpike
LinearEmbeddingMatrix	LinearEmbeddingMatrix
LinearEmbeddingMatrix-class	LinearEmbeddingMatrix
logcounts	namedAssays
logcounts,SingleCellExperiment-method	namedAssays
logcounts<-	namedAssays
logcounts<-,SingleCellExperiment-method	namedAssays
normcounts	namedAssays
normcounts,SingleCellExperiment-method	namedAssays
normcounts<-	namedAssays
normcounts<-,SingleCellExperiment-method	namedAssays
objectVersion	SCE-misc
objectVersion,SingleCellExperiment-method	SCE-misc
rbind,LinearEmbeddingMatrix-method	LEM-combine
rbind,SingleCellExperiment-method	SCE-combine
reducedDim	reducedDims
reducedDim,SingleCellExperiment-method	reducedDims
reducedDim<-	reducedDims
reducedDim<-,SingleCellExperiment-method	reducedDims
reducedDimNames	reducedDims
reducedDimNames,SingleCellExperiment-method	reducedDims
reducedDims	reducedDims
reducedDims,SingleCellExperiment-method	reducedDims
reducedDims<-	reducedDims
reducedDims<-,SingleCellExperiment-method	reducedDims
rowData,SingleCellExperiment-method	SCE-misc
sampleFactors	LEM-getset
sampleFactors,LinearEmbeddingMatrix-method	LEM-getset
sampleFactors<-	LEM-getset
sampleFactors<-,LinearEmbeddingMatrix-method	LEM-getset
show,LinearEmbeddingMatrix-method	LEM-misc
show,SingleCellExperiment-method	SCE-misc
SingleCellExperiment	SingleCellExperiment
SingleCellExperiment-class	SingleCellExperiment
sizeFactorNames	sizeFactors
sizeFactorNames,SingleCellExperiment-method	sizeFactors
sizeFactors	sizeFactors
sizeFactors,SingleCellExperiment-method	sizeFactors
sizeFactors<-,SingleCellExperiment-method	sizeFactors
spikeNames	isSpike
spikeNames,SingleCellExperiment-method	isSpike
subset,SingleCellExperiment-method	SCE-subset
tpm	namedAssays
tpm,SingleCellExperiment-method	namedAssays
tpm<-	namedAssays
tpm<-,SingleCellExperiment-method	namedAssays
[,LinearEmbeddingMatrix,ANY,ANY,ANY-method	LEM-subset
[,LinearEmbeddingMatrix,ANY,ANY-method	LEM-subset
[,LinearEmbeddingMatrix,ANY-method	LEM-subset
[,SingleCellExperiment,ANY,ANY,ANY-method	SCE-subset
[,SingleCellExperiment,ANY,ANY-method	SCE-subset
[,SingleCellExperiment,ANY-method	SCE-subset
[<-,LinearEmbeddingMatrix,ANY,ANY,LinearEmbeddingMatrix-method	LEM-subset
[<-,SingleCellExperiment,ANY,ANY,SingleCellExperiment-method	SCE-subset
