Package: SeqArray
Type: Package
Title: Big Data Management of Whole-genome Sequence Variant Calls
Version: 1.20.2
Date: 2018-09-10
Depends: R (>= 3.5.0), gdsfmt (>= 1.10.1)
Imports: methods, parallel, IRanges, GenomicRanges, GenomeInfoDb,
        Biostrings, S4Vectors
LinkingTo: gdsfmt
Suggests: digest, crayon, RUnit, knitr, Rcpp, SNPRelate, Biobase,
        BiocParallel, BiocGenerics, Rsamtools, VariantAnnotation
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
        email="zhengx@u.washington.edu"),
        person("Stephanie", "Gogarten", role="aut",
        email="sdmorris@u.washington.edu"),
        person("David", "Levine", role="ctb"),
        person("Cathy", "Laurie", role="ctb"))
Description: Big data management of whole-genome sequencing variant calls with
        thousands of individuals: genotypic data (e.g., SNVs, indels and
        structural variation calls) and annotations in SeqArray files are
        stored in an array-oriented and compressed manner, with efficient data
        access using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
URL: http://github.com/zhengxwen/SeqArray
BugReports: http://github.com/zhengxwen/SeqArray/issues
biocViews: Infrastructure, DataRepresentation, Sequencing, Genetics
git_url: https://git.bioconductor.org/packages/SeqArray
git_branch: RELEASE_3_7
git_last_commit: 7277e82
git_last_commit_date: 2018-09-10
Date/Publication: 2018-09-10
NeedsCompilation: yes
Packaged: 2018-09-11 01:40:54 UTC; biocbuild
Author: Xiuwen Zheng [aut, cre],
  Stephanie Gogarten [aut],
  David Levine [ctb],
  Cathy Laurie [ctb]
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>
Built: R 3.5.1; i386-w64-mingw32; 2018-09-11 10:41:18 UTC; windows
Archs: i386, x64
