CIMLR_Estimate_Number_of_Clusters {SIMLR} | R Documentation

## CIMLR Estimate Number of Clusters

### Description

estimate the number of clusters by means of two huristics as discussed in the CIMLR paper

### Usage

    CIMLR_Estimate_Number_of_Clusters(all_data, NUMC = 2:5, cores.ratio = 1)

### Arguments

`all_data` | is a list of multi-omic data each of which is an (m x n) data matrix of measurements of cancer patients
`NUMC` | vector of number of clusters to be considered
`cores.ratio` | ratio of the number of cores to be used when computing the multi-kernel

### Value

a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR

### Examples

    CIMLR_Estimate_Number_of_Clusters(GliomasReduced$in_X,
       NUMC = 2:5,
       cores.ratio = 0)

[Package SIMLR version 1.6.0 Index]