organise_marker_genes {SC3} | R Documentation

## Get marker genes from an object of `SingleCellExperiment` class

### Description

This functions returns all marker gene columns from the `phenoData` slot of the input object corresponding to the number of clusters `k`. Additionally, it rearranges genes by the cluster index and order them by the area under the ROC curve value inside of each cluster.

### Usage

    organise_marker_genes(object, k, p_val, auroc)

### Arguments

`object` | an object of `SingleCellExperiment` class
`k` | number of cluster
`p_val` | p-value threshold
`auroc` | area under the ROC curve threshold

[Package SC3 version 1.8.0 Index]