JSONOutput {PhenStat} | R Documentation

## Method "JSONOutput"

### Description

Wrapper for the model fitting results. Returns model fitting and testing results in a JSON format. Assumes that modelling results are stored in the `PhenTestResult` object (output from function `testDataset`).

### Usage

        JSONOutput(phenTestResult,
    				phenotypeThreshold = 0.01)

### Arguments

`phenTestResult` | instance of the `PhenTestResult` class that comes from the function `testDataset`; mandatory argument
`phenotypeThreshold` | a numerical value defining the threshold to use in classificationTag; default value 0.01

### Value

Returns a vector with model fitting results in JSON format: model output summary and other values

### Author(s)

Natalja Kurbatova

### See Also

`PhenTestResult`

### Examples

    	## Not run:
        # Mixed Model framework
        file <- system.file("extdata", "test1.csv", package="PhenStat")
        test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
                testGenotype="Sparc/Sparc")
        result <- PhenStat:::testDataset(test,
                depVariable="Lean.Mass")
        PhenStat:::JSONOutput(result)

        # Fishe Exact Test framework
        file <- system.file("extdata", "test_categorical.csv", package="PhenStat")
        test2 <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
                testGenotype="Aff3/Aff3")
        result2 <- PhenStat:::testDataset(test2,
                depVariable="Thoracic.Processes",
                method="FE")
        PhenStat:::JSONOutput(result2)
    	## End(Not run)

[Package PhenStat version 2.17.0 Index]