testFinalLRModel {PhenStat} | R Documentation

## Method "testFinalLRModel"

### Description

Performs diagnostic tests for Logistic Regression model quality of fit. There are no arguments checks assuming that function is called internally from the "finalLRModel" function. Otherwise should be used with precaution.

### Usage

        testFinalLRModel(phenTestResult)

### Arguments

`phenTestResult` | instance of the `PhenTestResult` class that comes from the function `testDataset` ; mandatory argument

### Value

Returns a vector with model fitting results

### Author(s)

Natalja Kurbatova, Natasha Karp, Jeremy Mason

### References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410

West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

### See Also

`PhenTestResult`

### Examples

        file <- system.file("extdata", "testLR.csv", package="PhenStat")
        testLR <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'),
                testGenotype="Mock")
        testLR2 <- PhenStat:::LRDataset(testLR,"V2")
        resultLR <- PhenStat:::testDataset(testLR2,
                depVariable="V2",
                method="LR")
        PhenStat:::testFinalLRModel(resultLR)

[Package PhenStat version 2.17.0 Index]