# Implementation of MultiDataSet and ResultSet

## Documentation for package ‘MultiDataSet’ version 1.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

MultiDataSet-package | MultiDataSet: Implementation of the BRGE's basic classes
add_eset | Method to add an 'eSet' to 'MultiDataSet'.
add_eset-method | MultiDataSet instances
add_genexp | Method to add an expression microarray dataset to 'MultiDataSet'.
add_genexp-method | MultiDataSet instances
add_methy | Method to add a slot of methylation to 'MultiDataSet'.
add_methy-method | MultiDataSet instances
add_rnaseq | Method to add an expression RNA seq dataset to 'MultiDataSet'.
add_rnaseq-method | MultiDataSet instances
add_rse | Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'.
add_rse-method | MultiDataSet instances
add_se | Method to add a 'SummarizedExperiment' to 'MultiDataSet'.
add_se-method | MultiDataSet instances
add_snps | Method to add a slot of SNPs to 'MultiDataSet'.
add_snps-method | MultiDataSet instances
add_table | Method to add a 'matrix' to 'MultiDataSet'.
add_table-method | MultiDataSet instances
as.list | MultiDataSet instances
as.list-method | MultiDataSet instances
assayData | MultiDataSet instances
assayData-method | MultiDataSet instances
chrNumToChar | Convert chr numbers to chr strings
commonIds | Get the name of the ids common to all datasets
commonIds-method | MultiDataSet instances
commonSamples | Method to select samples that are present in all datasets.
commonSamples-method | MultiDataSet instances
createMultiDataSet | MultiDataSet instances
create_resultset | Class ResultSet
dims | MultiDataSet instances
dims-method | MultiDataSet instances
fData | MultiDataSet instances
fData-method | MultiDataSet instances
fData-method | Class ResultSet
featureData | MultiDataSet instances
featureData-method | MultiDataSet instances
getAssociation | Method to extrat feature result from a ResultSet
getAssociation-method | Class ResultSet
lambdaClayton | Lambda Calculation for a vector of P-Values
length | MultiDataSet instances
length-method | MultiDataSet instances
length-method | Class ResultSet
mae2mds | Convert a 'MultiAssayExperiment' to a 'MultiDataSet'
mds2mae | Convert a 'MultiDataSet' to a 'MultiAssayExperiment'
MultiDataSet | MultiDataSet: Implementation of the BRGE's basic classes
MultiDataSet-class | MultiDataSet instances
MultiDataSet-methods | MultiDataSet instances
MultiDataSet-methods, | MultiDataSet instances
names | MultiDataSet instances
names-method | MultiDataSet instances
names-method | Class ResultSet
ncol | MultiDataSet instances
ncol-method | MultiDataSet instances
nrow | MultiDataSet instances
nrow-method | MultiDataSet instances
opt | Method to get the options sued to create the ResultSet
opt-method | Class ResultSet
pData | MultiDataSet instances
pData-method | MultiDataSet instances
phenoData | MultiDataSet instances
phenoData-method | MultiDataSet instances
plot-method | Class ResultSet
qq_plot | Function to draw a QQ Plot from a vector of numbers
ResultSet | Class ResultSet
ResultSet-class | Class ResultSet
ResultSet-methods | Class ResultSet
rowRanges | MultiDataSet instances
rowRanges-method | MultiDataSet instances
rowRangesElements | Get the name of the datasets that have rowRanges
rowRangesElements-method | MultiDataSet instances
rset | Example 'ResultSet'
sampleNames-method | MultiDataSet instances
subset-method | MultiDataSet instances
varLabels-method | Class ResultSet
volcano_plot | Function to draw a Volcano Plot
w_iclusterplus | Apply iClusterPlus clustering method to a MultiDataSet object
w_iclusterplus-method | MultiDataSet instances
w_mcia | Apply mcia integration method to a MultiDataSet object
w_mcia-method | MultiDataSet instances
[ | MultiDataSet instances
[-method | MultiDataSet instances
[[-method | MultiDataSet instances