BuildMST {FlowSOM} | R Documentation

## Build Minimal Spanning Tree

### Description

Add minimal spanning tree description to the FlowSOM object

### Usage

    BuildMST(fsom, silent = FALSE, tSNE = FALSE)

### Arguments

`fsom` | FlowSOM object, as generated by `BuildSOM`
`silent` | If `TRUE`, no progress updates will be printed
`tSNE` | If `TRUE`, an alternative tSNE layout is computed as well

### Value

FlowSOM object containing MST description

### See Also

`BuildSOM`, `PlotStars`

### Examples

    # Read from file, build self-organizing map
    fileName <- system.file("extdata","lymphocytes.fcs",package="FlowSOM")
    flowSOM.res <- ReadInput(fileName, compensate=TRUE,transform=TRUE,
                             scale=TRUE)
    flowSOM.res <- BuildSOM(flowSOM.res,colsToUse=c(9,12,14:18))

    # Build the Minimal Spanning Tree
    flowSOM.res <- BuildMST(flowSOM.res)

[Package FlowSOM version 1.12.0 Index]