diffLogoTable {DiffLogo} | R Documentation

## Draw DiffLogo-table

### Description

Draws a table of DiffLogos.

### Usage

    diffLogoTable(PWMs, sampleSizes = NULL, alphabet = DNA,
      configuration = list(), ...)

### Arguments

`PWMs` | a list/vector of position weight matrices (PWMs) each of type pwm, data.frame, or matrix
`sampleSizes` | the number of sequences behind each PWM
`alphabet` | the alphabet of the given PWMs
`configuration` | list of (probably part of) of configuration options. See diffLogoTableConfiguration.
`...` | set of parameters passed to the function 'axis' for plotting

### Value

none (draws table of difference logos)

### Author(s)

Martin Nettling

### Examples

    motif_folder= "extdata/pwm"
    motif_names = c("HepG2","MCF7","HUVEC","ProgFib")
    motifs = list()
    for (name in motif_names) {
      fileName = paste(motif_folder,"/",name,".pwm",sep="")
      file = system.file(fileName, package = "DiffLogo")
      motifs[[name]] = getPwmFromPwmFile(file)
    }

    diffLogoTable(motifs)

[Package DiffLogo version 2.4.0 Index]