readHeinzTree {BioNet} | R Documentation

## Convert HEINZ output to tree

### Description

Converts the HEINZ output to a tree in graph format. If the output is in matrix form, it will create a list of graphs. The function needs the node and edge file and the original network from which the module is calculated.

### Usage

    readHeinzTree(node.file, edge.file, network, format=c("graphNEL", "igraph"))

### Arguments

`node.file` | Heinz node output file.
`edge.file` | Heinz edge output file.
`network` | Original network from which Heinz input was created.
`format` | Output format of the graph, either igraph or graphNEL.

### Value

A graph object.

### Author(s)

Daniela Beisser

### Examples

    library(DLBCL)
    data(interactome)
    # precomputed Heinz output files
    ## Not run: lib <- file.path(.path.package("BioNet"), "extdata")
    module <- readHeinzTree(node.file=file.path(lib, "lymphoma_nodes_001.txt.0.hnz"), edge.file=file.path(lib, "lymphoma_edges_001.txt.0.hnz"), network=interactome, format="graphNEL");
    plotModule(module);

    ## End(Not run)

[Package BioNet version 1.40.0 Index]