# Biological Network Analysis

## Documentation for package ‘BioNetStat’ version 1.0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

adjacencyMatrix | Adjacency matrix
averageBetweennessCentrality | Network features
averageClosenessCentrality | Network features
averageClusteringCoefficient | Network features
averageDegreeCentrality | Network features
averageEigenvectorCentrality | Network features
averageShortestPath | Network features
betweennessCentrality | Node scores
betweennessCentralityTest | Network equality test
betweennessCentralityVertexTest | Node score equality test
bnsDataTest | Gene expression in gliomas
centralityPathPlot | Structural measures of vertices view in metabolic pathways
closenessCentrality | Node scores
closenessCentralityTest | Network equality test
closenessCentralityVertexTest | Node score equality test
clusteringCoefficient | Node scores
clusteringCoefficientTest | Network equality test
clusteringCoefficientVertexTest | Node score equality test
degreeCentrality | Node scores
degreeCentralityTest | Network equality test
degreeCentralityVertexTest | Node score equality test
degreeDistributionTest | Network equality test
diffNetAnalysis | Differential network analysis method
doLabels | Class vector of data table
eigenvectorCentrality | Node scores
eigenvectorCentralityTest | Network equality test
eigenvectorCentralityVertexTest | Node score equality test
KLdegree | Kullback-Liebler divergence among the density functions of the degrees of two or more graphs
KLspectrum | Kullback-Liebler divergence among the spectral density functions of two or more graphs
labels | Labels of glioma tissues in gene expression
nDegreeDensities | Density functions of the degrees of n graphs
networkFeature | Network features
networkTest | Network equality test
nodeScores | Node scores
nodeTest | Node score equality test
nSpectralDensities | Spectral Density functions of n graphs
pathPlot | Variable values view in metabolic pathways
readGmtFile | Read a collection of gene sets (*.gmt)
readVarFile | Read variable values matrix
runBioNetStat | Run BNS
spectralDistributionTest | Network equality test
spectralEntropies | Network features
spectralEntropyTest | Network equality test
varFile | Gene expression in glioma tissues