BPRMeth-package	BPRMeth
.datatable.aware	BPRMeth
basis	create_basis
bernoulli_data	bernoulli_data
betareg_gradient	model_log_likelihood
betareg_log_likelihood	model_log_likelihood
beta_data	beta_data
binomial_data	binomial_data
boxplot_cluster_expr	boxplot_cluster_expr
BPRMeth	BPRMeth
bpr_cluster_wrap	bpr_cluster_wrap
bpr_gradient	model_log_likelihood
bpr_log_likelihood	model_log_likelihood
bpr_optim	bpr_optimize
bpr_optim.list	bpr_optimize
bpr_optim.matrix	bpr_optimize
bpr_optimise	bpr_optimize
bpr_optimize	bpr_optimize
bpr_predict_wrap	bpr_predict_wrap
cluster_mle	cluster_profiles_mle
cluster_profiles_mle	cluster_profiles_mle
cluster_profiles_vb	cluster_profiles_vb
cluster_profile_mle	cluster_profiles_mle
cluster_profile_vb	cluster_profiles_vb
cluster_vb	cluster_profiles_vb
create_anno_region	create_anno_region
create_basis	create_basis
create_basis_function	create_basis
create_fourier_object	create_basis
create_polynomial_object	create_basis
create_rbf_object	create_basis
create_region	create_region_object
create_region_obj	create_region_object
create_region_object	create_region_object
designmatrix	design_matrix
design_matrix	design_matrix
design_matrix.default	design_matrix
design_matrix.fourier	design_matrix
design_matrix.polynomial	design_matrix
design_matrix.rbf	design_matrix
des_mat	design_matrix
des_matrix	design_matrix
encode_expr	encode_expr
encode_met	encode_met
eval_function	eval_functions
eval_function.fourier	eval_functions
eval_function.polynomial	eval_functions
eval_function.rbf	eval_functions
eval_functions	eval_functions
eval_probit_function	eval_functions
gaussian_data	gaussian_data
genomic_region	create_region_object
gex_data	gex_data
inference_gibbs	infer_profiles_gibbs
inference_mle	infer_profiles_mle
inference_vb	infer_profiles_vb
infer_profiles_gibbs	infer_profiles_gibbs
infer_profiles_mle	infer_profiles_mle
infer_profiles_vb	infer_profiles_vb
infer_profile_gibbs	infer_profiles_gibbs
infer_profile_mle	infer_profiles_mle
infer_profile_vb	infer_profiles_vb
inner_predict_model_expr	inner_predict_model_expr
inner_train_model_expr	inner_train_model_expr
lr_log_likelihood	model_log_likelihood
meth_data	meth_data
met_region	create_region_object
model_likelihood	model_log_likelihood
model_log_likelihood	model_log_likelihood
obs_log_likelihood	model_log_likelihood
obs_model_likelihood	model_log_likelihood
old_boxplot_cluster_gex	old_boxplot_cluster_gex
old_plot_cluster_prof	old_plot_cluster_prof
old_plot_fitted_profiles	old_plot_fitted_profiles
plot_cluster_profiles	plot_cluster_profiles
plot_infer_profiles	plot_infer_profiles
plot_predicted_expr	plot_predicted_expr
pool_bs_seq_rep	pool_bs_seq_rep
predict_expr	predict_expr
preprocess_bs_seq	preprocess_bs_seq
preprocess_final_HTS_data	preprocess_final_HTS_data
process_haib_caltech_wrap	process_haib_caltech_wrap
read_anno	read_anno
read_bs_encode_haib	read_bs_encode_haib
read_chrom_size	read_chrom_size
read_expr	read_expr
read_met	read_met
read_rna_encode_caltech	read_rna_encode_caltech
region_object	create_region_object
sum_weighted_betareg_grad	model_log_likelihood
sum_weighted_betareg_lik	model_log_likelihood
sum_weighted_bpr_grad	model_log_likelihood
sum_weighted_bpr_lik	model_log_likelihood
