AnnotationHubData-package	AnnotationHubData-package
AnnotationHubRecipes-package	AnnotationHubData-package
ahmToJson	AnnotationHubMetadata-class
amazon	upload_to_S3
AnnotationHubMetadata	AnnotationHubMetadata-class
AnnotationHubMetadata-class	AnnotationHubMetadata-class
AnnotationHubRecipes	AnnotationHubData-package
annotationHubRoot	ImportPreparer-class
AWS	upload_to_S3
class:AnnotationHubMetadata	AnnotationHubMetadata-class
class:HubMetadata	AnnotationHubMetadata-class
constructSeqInfo	AnnotationHubMetadata-class
dbSNPVCFImportPreparer	ImportPreparer-class
dbSNPVCFImportPreparer-class	ImportPreparer-class
deleteResources	AnnotationHubMetadata-class
EncodeImportPreparer	ImportPreparer-class
EncodeImportPreparer-class	ImportPreparer-class
EnsemblFastaImportPreparer	ImportPreparer-class
EnsemblFastaImportPreparer-class	ImportPreparer-class
ensemblFastaToFaFile	makeEnsemblFasta
ensemblFastaToTwoBitFile	makeEnsemblFasta
EnsemblGtfImportPreparer	ImportPreparer-class
EnsemblGtfImportPreparer-class	ImportPreparer-class
flog	flog
gencodeFastaToFaFile	makeGencodeFasta
getImportPreparer	ImportPreparer-class
getImportPreparerClasses	AnnotationHubMetadata-class
Grasp2ImportPreparer	ImportPreparer-class
Grasp2ImportPreparer-class	ImportPreparer-class
HaemCodeImportPreparer	ImportPreparer-class
HaemCodeImportPreparer-class	ImportPreparer-class
hubError	AnnotationHubMetadata-class
hubError,HubMetadata-method	AnnotationHubMetadata-class
hubError,list-method	AnnotationHubMetadata-class
hubError<-	AnnotationHubMetadata-class
hubError<-,HubMetadata,character-method	AnnotationHubMetadata-class
hubError<-,list,character-method	AnnotationHubMetadata-class
HubMetadata	AnnotationHubMetadata-class
HubMetadata-class	AnnotationHubMetadata-class
HubMetadataFromJson	AnnotationHubMetadata-class
ImportPreparer-class	ImportPreparer-class
Inparanoid8ImportPreparer	ImportPreparer-class
Inparanoid8ImportPreparer-class	ImportPreparer-class
inputFiles	AnnotationHubMetadata-class
inputFiles,HubMetadata-method	AnnotationHubMetadata-class
makeAnnotationHubMetadata	makeAnnotationHubMetadata
makeAnnotationHubResource	AnnotationHubMetadata-class
makeEnsemblFasta	makeEnsemblFasta
makeEnsemblFastaToAHM	makeEnsemblFasta
makeEnsemblTwoBitToAHM	makeEnsemblFasta
makeGencodeFasta	makeGencodeFasta
makeGencodeFastaToAHM	makeGencodeFasta
makeNCBIToOrgDbsToAHM	makeStandardOrgDbs
makeNonStandardOrgDbs	makeStandardOrgDbs
makeStandardOrgDbs	makeStandardOrgDbs
makeStandardOrgDbsToAHM	makeStandardOrgDbs
makeStandardTxDbs	makeStandardOrgDbs
makeStandardTxDbsToAHM	makeStandardOrgDbs
metadata	AnnotationHubMetadata-class
metadata,HubMetadata-method	AnnotationHubMetadata-class
metadata<-	AnnotationHubMetadata-class
metadata<-,HubMetadata,list-method	AnnotationHubMetadata-class
metadataList	ImportPreparer-class
metadataTable	ImportPreparer-class
NCBIImportPreparer	ImportPreparer-class
NCBIImportPreparer-class	ImportPreparer-class
newResources	ImportPreparer-class
newResources,dbSNPVCFImportPreparer-method	ImportPreparer-class
newResources,EncodeImportPreparer-method	ImportPreparer-class
newResources,EnsemblFastaImportPreparer-method	ImportPreparer-class
newResources,EnsemblGtfImportPreparer-method	ImportPreparer-class
newResources,Grasp2ImportPreparer-method	ImportPreparer-class
newResources,HaemCodeImportPreparer-method	ImportPreparer-class
newResources,ImportPreparer-method	ImportPreparer-class
newResources,Inparanoid8ImportPreparer-method	ImportPreparer-class
newResources,NCBIImportPreparer-method	ImportPreparer-class
newResources,RefNetImportPreparer-method	ImportPreparer-class
newResources,UCSCChainPreparer-method	ImportPreparer-class
newResources,UCSCFullTrackImportPreparer-method	ImportPreparer-class
newResources,UCSCTrackImportPreparer-method	ImportPreparer-class
outputFile	AnnotationHubMetadata-class
outputFile,HubMetadata-method	AnnotationHubMetadata-class
pushMetadata	updateResources
pushResources	updateResources
recipeName	AnnotationHubMetadata-class
recipeName,HubMetadata-method	AnnotationHubMetadata-class
RefNetImportPreparer	ImportPreparer-class
RefNetImportPreparer-class	ImportPreparer-class
run	AnnotationHubMetadata-class
run,AnnotationHubMetadata-method	AnnotationHubMetadata-class
runRecipes	updateResources
runRecipes,AnnotationHubMetadata-method	updateResources
S3	upload_to_S3
show	AnnotationHubMetadata-class
show,HubMetadata-method	AnnotationHubMetadata-class
show,ImportPreparer-method	ImportPreparer-class
sourceUrls	ImportPreparer-class
toJson	AnnotationHubMetadata-class
UCSCChainPreparer	ImportPreparer-class
UCSCChainPreparer-class	ImportPreparer-class
UCSCTrackImportPreparer	ImportPreparer-class
UCSCTrackImportPreparer-class	ImportPreparer-class
updateResources	updateResources
upload_to_S3	upload_to_S3
