exportHighConfSub {wavClusteR} | R Documentation

## Export high-confidence substitutions as BED track

### Description

Export high-confidence substitutions as BED track, compatible with the UCSC genome browser

### Usage

    exportHighConfSub(highConfSub, filename = 'highConfSub.bed',
    trackname = 'highConfSub', description = 'highConfSub')

### Arguments

`highConfSub` | GRanges object containing high-confidence substitution sites as returned by the getHighConfSub function
`filename` | A character defining the BED file name. Default to "wavClusters.bed"
`trackname` | A character defining the track.name of the BED file. Default to "wavClusters"
`description` | A character defining the description of the BED file. Default to "wavClusters"

### Value

A BED file of the exported GRanges object

### Note

Substitutions are color coded according to their strand information (red for the plus strand, blue for the minus strand).

### Author(s)

Federico Comoglio

### See Also

`getHighConfSub`

[Package wavClusteR version 2.12.1 Index]