PhenoParams {splatter} | R Documentation

## The PhenoParams class

### Description

S4 class that holds parameters for the PhenoPath simulation.

### Parameters

The PhenoPath simulation uses the following parameters:

`nGenes`

  The number of genes to simulate.

`nCells`

  The number of cells to simulate.

`[seed]`

  Seed to use for generating random numbers.

`[n.de]`

  Number of genes to simulate from the differential expression regime

`[n.pst]`

  Number of genes to simulate from the pseudotime regime

`[n.pst.beta]`

  Number of genes to simulate from the pseudotime + beta interactions regime

`[n.de.pst.beta]`

  Number of genes to simulate from the differential expression + pseudotime + interactions regime

The parameters not shown in brackets can be estimated from real data using `phenoEstimate`. For details of the PhenoPath simulation see `phenoSimulate`.

[Package splatter version 1.2.2 Index]