plotLOH {rCGH} | R Documentation

## Allelic Differences Visualization

### Description

This function display a static view of the allele differences, when available.

### Usage

    ## S4 method for signature 'rCGH'
    plotLOH(object, Title=NULL)

### Arguments

`object` | : An object of class `"rCGH"`
`Title` | : character string. A title for the density plot. If `NULL` (default), the sample name (when exists) is used.

### Value

None.

### Author(s)

Frederic Commo

### See Also

`plotDensity`, `plotProfile`, `multiplot`, `view`

### Examples

    filePath <- system.file("extdata", "Affy_cytoScan.cyhd.CN5.CNCHP.txt.bz2",
        package = "rCGH")
    cgh <- readAffyCytoScan(filePath, sampleName = "AffyScHD")
    cgh <- adjustSignal(cgh, nCores=1)
    cgh <- segmentCGH(cgh, nCores=1)
    cgh <- EMnormalize(cgh)

    # Static visalizations
    plotLOH(cgh)

[Package rCGH version 1.8.1 Index]