Package: oneSENSE
Type: Package
Title: One-Dimensional Soli-Expression by Nonlinear Stochastic
        Embedding (OneSENSE)
Version: 1.0.0
Date: 2017-07-10
Author: Cheng Yang, Evan Newell, Yong Kee Tan
Maintainer: Yong Kee Tan <yongkee.t@gmail.com>
Description: A graphical user interface that facilitates the
        dimensional reduction method based on the t-distributed
        stochastic neighbor embedding (t-SNE) algorithm, for
        categorical analysis of mass cytometry data. With One-SENSE,
        measured parameters are grouped into predefined categories, and
        cells are projected onto a space composed of one dimension for
        each category. Each dimension is informative and can be
        annotated through the use of heatplots aligned in parallel to
        each axis, allowing for simultaneous visualization of two
        catergories across a two-dimensional plot. The cellular
        occupancy of the resulting plots alllows for direct assessment
        of the relationships between the categories.
Depends: R (>= 3.4), webshot, shiny, shinyFiles, scatterplot3d
Imports: Rtsne, plotly, gplots, grDevices, graphics, stats, utils,
        methods, flowCore
License: GPL (>=3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Software, FlowCytometry, GUI, DimensionReduction
NeedsCompilation: no
Packaged: 2017-10-31 02:15:23 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 06:47:24 UTC; windows
