DeprecatedPathwayList-class
                        Class '"DeprecatedPathwayList"'
Pathway-class           Class '"Pathway"'
PathwayList-class       Class '"PathwayList"'
Pathways-class          Class '"Pathways"'
as.list.DeprecatedPathwayList
                        Convertion of DeprecatedPathwayLists into
                        lists.
as.list.PathwayList     Convertion of PathwayLists into lists.
biocarta                BioCarta pathways
buildPathway            Build a Pathway object.
convertIdentifiers      Convert the node identifiers of a pathway.
cytoscapePlot           Plot a pathway graph in Cytoscape
humancyc                Humancyc pathways
kegg                    KEGG pathways
nci                     NCI pathways
panther                 Panther pathways
pathwayDatabases        List the available pathway databases.
pathwayGraph            Graph representing the topology of a pathway
pathways                Retrieve a list of pathways.
pharmgkb                PharmGKB pathways
prepareSPIA             Prepare pathway dataset needed by runSPIA.
reactome                Reactome pathways
runClipper              Run a topological analysis on an expression
                        dataset using clipper.
runSPIA                 Run SPIA analysis
runTopologyGSA          Run a topological analysis on an expression
                        dataset using topologyGSA.
smpdb                   SMPDB pathways
