# Generated by roxygen2: do not edit by hand

export(MAPlot)
export(MAZoom)
export(actionButton)
export(addDataCols)
export(addID)
export(add_title_pos)
export(all2all)
export(applyFilters)
export(applyFiltersToMergedComparison)
export(bookmarkServer)
export(bookmarkUI)
export(clusterData)
export(compareClust)
export(copy2newDirectory)
export(correctBatchEffect)
export(deServer)
export(deUI)
export(drawPCAExplained)
export(getAfterLoadMsg)
export(getColorShapeSelection)
export(getColors)
export(getCompSelection)
export(getCondMsg)
export(getConditionSelector)
export(getConditionSelectorFromMeta)
export(getCutOffSelection)
export(getDataForTables)
export(getDataPrepPanel)
export(getDensityPlot)
export(getDomains)
export(getDown)
export(getDownloadSection)
export(getEnrichDO)
export(getEnrichGO)
export(getEnrichKEGG)
export(getEntrezIds)
export(getGOLeftMenu)
export(getGOPlots)
export(getGeneList)
export(getGeneSetData)
export(getGoPanel)
export(getHelpButton)
export(getHoverPlots)
export(getIQRPlot)
export(getInitialMenu)
export(getIntHeatmap)
export(getIntHeatmapVis)
export(getJsonObj)
export(getKEGGModal)
export(getLeftMenu)
export(getLegendSelect)
export(getLoadingMsg)
export(getLogo)
export(getMainPanel)
export(getMainPanelPlots)
export(getMainPlotsLeftMenu)
export(getMean)
export(getMergedComparison)
export(getMethodDetails)
export(getMostVariedList)
export(getNormalizedMatrix)
export(getOrganism)
export(getOrganismBox)
export(getOrganismPathway)
export(getPCAexplained)
export(getPCselection)
export(getProgramTitle)
export(getQCLeftMenu)
export(getQCPanel)
export(getQCPlots)
export(getQCReplot)
export(getSampleNames)
export(getSamples)
export(getSearchData)
export(getSelHeat)
export(getSelectInputBox)
export(getSelectedCols)
export(getSelectedDatasetInput)
export(getShapeColor)
export(getStartPlotsMsg)
export(getStartupMsg)
export(getTableStyle)
export(getTextOnOff)
export(getToolTipPCA)
export(getToolTipText)
export(getUp)
export(getUpDown)
export(get_state_id)
export(get_user_info)
export(hideObj)
export(installpack)
export(link_brush)
export(load_data)
export(loadpack)
export(logSliderJScode)
export(mainScatter)
export(panel.cor)
export(panel.hist)
export(plot_pca)
export(prepAddQCPlots)
export(prepDEOutput)
export(prepDataContainer)
export(prepDataForQC)
export(push)
export(readMetaData)
export(removeBookmark)
export(removeCols)
export(round_vals)
export(runBayseq)
export(runDE)
export(runDESeq)
export(runDESeq2)
export(runEdgeR)
export(runHeatmap)
export(runLimma)
export(run_pca)
export(saveQCPlot)
export(scatterZoom)
export(selectBatchEffect)
export(selectConditions)
export(selectedInput)
export(setFilterParams)
export(showObj)
export(startDEBrowser)
export(textareaInput)
export(togglePanels)
export(volcanoPlot)
export(volcanoZoom)
export(whitelist)
import(RColorBrewer)
import(V8)
import(googleAuthR)
import(gplots)
import(org.Hs.eg.db)
import(org.Mm.eg.db)
import(pathview)
import(shinyBS)
import(shinydashboard)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(DOSE,dotplot)
importFrom(DOSE,enrichDO)
importFrom(DOSE,enrichMap)
importFrom(DOSE,gseaplot)
importFrom(DT,dataTableOutput)
importFrom(DT,datatable)
importFrom(DT,formatRound)
importFrom(DT,formatStyle)
importFrom(DT,renderDataTable)
importFrom(DT,styleInterval)
importFrom(RCurl,getURL)
importFrom(annotate,geneSymbols)
importFrom(baySeq,getLibsizes)
importFrom(baySeq,getLikelihoods)
importFrom(baySeq,getLikelihoods.NB)
importFrom(baySeq,getPriors)
importFrom(baySeq,getPriors.NB)
importFrom(baySeq,nbinomDensity)
importFrom(clusterProfiler,compareCluster)
importFrom(clusterProfiler,enrichGO)
importFrom(clusterProfiler,enrichKEGG)
importFrom(d3heatmap,d3heatmap)
importFrom(d3heatmap,d3heatmapOutput)
importFrom(d3heatmap,renderD3heatmap)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,equalizeLibSizes)
importFrom(edgeR,estimateCommonDisp)
importFrom(edgeR,exactTest)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,ylab)
importFrom(ggvis,"%>%")
importFrom(ggvis,add_axis)
importFrom(ggvis,add_legend)
importFrom(ggvis,add_tooltip)
importFrom(ggvis,axis_props)
importFrom(ggvis,band)
importFrom(ggvis,bind_shiny)
importFrom(ggvis,create_broker)
importFrom(ggvis,ggvis)
importFrom(ggvis,ggvisOutput)
importFrom(ggvis,group_by)
importFrom(ggvis,handle_brush)
importFrom(ggvis,hide_axis)
importFrom(ggvis,hide_legend)
importFrom(ggvis,layer_bars)
importFrom(ggvis,layer_boxplots)
importFrom(ggvis,layer_densities)
importFrom(ggvis,layer_points)
importFrom(ggvis,layer_rects)
importFrom(ggvis,layer_text)
importFrom(ggvis,scale_nominal)
importFrom(ggvis,scale_numeric)
importFrom(ggvis,scale_ordinal)
importFrom(ggvis,set_options)
importFrom(gplots,heatmap.2)
importFrom(gplots,redblue)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,pairs)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(igraph,layout.kamada.kawai)
importFrom(jsonlite,fromJSON)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(methods,new)
importFrom(reshape2,melt)
importFrom(shiny,HTML)
importFrom(shiny,NS)
importFrom(shiny,actionButton)
importFrom(shiny,actionLink)
importFrom(shiny,addResourcePath)
importFrom(shiny,br)
importFrom(shiny,callModule)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,enableBookmarking)
importFrom(shiny,eventReactive)
importFrom(shiny,fileInput)
importFrom(shiny,fluidPage)
importFrom(shiny,h4)
importFrom(shiny,helpText)
importFrom(shiny,htmlOutput)
importFrom(shiny,icon)
importFrom(shiny,img)
importFrom(shiny,isolate)
importFrom(shiny,mainPanel)
importFrom(shiny,need)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,onBookmark)
importFrom(shiny,onBookmarked)
importFrom(shiny,onRestore)
importFrom(shiny,onRestored)
importFrom(shiny,outputOptions)
importFrom(shiny,p)
importFrom(shiny,parseQueryString)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,reactiveValuesToList)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,shinyApp)
importFrom(shiny,shinyServer)
importFrom(shiny,shinyUI)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,sliderInput)
importFrom(shiny,stopApp)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,tags)
importFrom(shiny,textInput)
importFrom(shiny,textOutput)
importFrom(shiny,titlePanel)
importFrom(shiny,uiOutput)
importFrom(shiny,updateQueryString)
importFrom(shiny,updateTabsetPanel)
importFrom(shiny,updateTextInput)
importFrom(shiny,validate)
importFrom(shiny,wellPanel)
importFrom(shinyjs,disable)
importFrom(shinyjs,enable)
importFrom(shinyjs,extendShinyjs)
importFrom(shinyjs,hide)
importFrom(shinyjs,inlineCSS)
importFrom(shinyjs,js)
importFrom(shinyjs,onclick)
importFrom(shinyjs,show)
importFrom(shinyjs,useShinyjs)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,mahalanobis)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stringi,stri_rand_strings)
importFrom(sva,ComBat)
importFrom(utils,download.file)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,update.packages)
importFrom(utils,write.table)
importMethodsFrom(AnnotationDbi,as.data.frame)
importMethodsFrom(AnnotationDbi,as.list)
importMethodsFrom(AnnotationDbi,colnames)
importMethodsFrom(AnnotationDbi,exists)
importMethodsFrom(AnnotationDbi,head)
importMethodsFrom(AnnotationDbi,keys)
importMethodsFrom(AnnotationDbi,mapIds)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,ncol)
importMethodsFrom(AnnotationDbi,nrow)
importMethodsFrom(AnnotationDbi,sample)
importMethodsFrom(AnnotationDbi,subset)
importMethodsFrom(DOSE,dotplot)
importMethodsFrom(DOSE,summary)
importMethodsFrom(GenomicRanges,as.factor)
importMethodsFrom(GenomicRanges,setdiff)
importMethodsFrom(IRanges,"colnames<-")
importMethodsFrom(IRanges,"rownames<-")
importMethodsFrom(IRanges,as.matrix)
importMethodsFrom(IRanges,gsub)
importMethodsFrom(IRanges,lapply)
importMethodsFrom(IRanges,mean)
importMethodsFrom(IRanges,nchar)
importMethodsFrom(IRanges,paste)
importMethodsFrom(IRanges,rev)
importMethodsFrom(IRanges,rownames)
importMethodsFrom(IRanges,toupper)
importMethodsFrom(IRanges,unique)
importMethodsFrom(IRanges,which)
importMethodsFrom(S4Vectors,eval)
importMethodsFrom(S4Vectors,grep)
importMethodsFrom(S4Vectors,grepl)
importMethodsFrom(S4Vectors,levels)
importMethodsFrom(S4Vectors,sapply)
importMethodsFrom(S4Vectors,t)
importMethodsFrom(SummarizedExperiment,cbind)
importMethodsFrom(SummarizedExperiment,order)
importMethodsFrom(SummarizedExperiment,rbind)
importMethodsFrom(baySeq,"densityFunction<-")
importMethodsFrom(baySeq,"libsizes<-")
