MAPlot                  MAPlot
MAZoom                  MAZoom
actionButton            Buttons including Action Buttons and Event
                        Buttons
addDataCols             addDataCols
addID                   addID
add_title_pos           add_title_pos
all2all                 all2all
applyFilters            applyFilters
applyFiltersToMergedComparison
                        applyFiltersToMergedComparison
bookmarkServer          bookmarkServer
bookmarkUI              bookmarkUI
clusterData             clusterData
compareClust            compareClust
copy2newDirectory       copy2newDirectory
correctBatchEffect      Correct Batch Effect
deServer                deServer
deUI                    deUI
drawPCAExplained        drawPCAExplained
getAfterLoadMsg         getAfterLoadMsg
getColorShapeSelection
                        getColorShapeSelection
getColors               getColors
getCompSelection        getCompSelection
getCondMsg              getCondMsg
getConditionSelector    getConditionSelector
getConditionSelectorFromMeta
                        getConditionSelectorFromMeta
getCutOffSelection      getCutOffSelection
getDataForTables        getDataForTables get data to fill up tables tab
getDataPrepPanel        getDataPrepPanel
getDensityPlot          getDensityPlot
getDomains              getDomains
getDown                 getDown get down regulated data
getDownloadSection      getDownloadSection
getEnrichDO             getEnrichDO
getEnrichGO             getEnrichGO
getEnrichKEGG           getEnrichKEGG
getEntrezIds            getGeneList
getGOLeftMenu           getGOLeftMenu
getGOPlots              getGOPlots
getGeneList             getGeneList
getGeneSetData          getGeneSetData
getGoPanel              getGoPanel
getHelpButton           getHelpButton prepares a helpbutton for to go
                        to a specific site in the documentation
getHoverPlots           getHoverPlots
getIQRPlot              getIQRPlot
getInitialMenu          getInitialMenu
getIntHeatmap           getIntHeatmap
getIntHeatmapVis        getIntHeatmapVis
getJsonObj              getJsonObj
getKEGGModal            getKEGGModal prepares a helpbutton for to go to
                        a specific site in the documentation
getLeftMenu             getLeftMenu
getLegendSelect         getLegendSelect
getLoadingMsg           getLoadingMsg
getLogo                 getLogo
getMainPanel            getMainPanel
getMainPanelPlots       getMainPanelPlots
getMainPlotsLeftMenu    getMainPlotsLeftMenu
getMean                 getMean
getMergedComparison     getMergedComparison
getMethodDetails        get the detail boxes after DE method selected
getMostVariedList       getMostVariedList
getNormalizedMatrix     getNormalizedMatrix
getOrganism             getOrganism
getOrganismBox          getOrganismBox
getOrganismPathway      getOrganismPathway
getPCAexplained         getPCAexplained
getPCselection          getPCselection
getProgramTitle         getProgramTitle
getQCLeftMenu           getQCLeftMenu
getQCPanel              getQCPanel
getQCPlots              getQCPlots
getQCReplot             getQCReplot
getSampleNames          getSampleNames
getSamples              getSamples
getSearchData           getSearchData
getSelHeat              getSelHeat
getSelectInputBox       getSelectInputBox
getSelectedCols         getSelectedCols
getSelectedDatasetInput
                        getSelectedDatasetInput
getShapeColor           getShapeColor
getStartPlotsMsg        getStartPlotsMsg
getStartupMsg           getStartupMsg
getTableStyle           getTableStyle
getTextOnOff            getTextOnOff
getToolTipPCA           getToolTipPCA
getToolTipText          getToolTipText
getUp                   getUp get up regulated data
getUpDown               getUpDown get up+down regulated data
get_state_id            get_state_id
get_user_info           Get the logged in user's email and other info
hideObj                 hideObj
installpack             installpack
link_brush              link_brush
load_data               load_data.
loadpack                loadpack
logSliderJScode         logSliderJScode
mainScatter             mainScatter
panel.cor               panel.cor
panel.hist              panel.hist
plot_pca                plot_pca
prepAddQCPlots          prepAddQCPlots
prepDEOutput            prepDEOutput
prepDataContainer       prepDataContainer
prepDataForQC           prepDataForQC
push                    push
readMetaData            readMetaData
removeBookmark          removeBookmark
removeCols              removeCols
round_vals              round_vals
runBayseq               runBayseq
runDE                   runDE
runDESeq                runDESeq
runDESeq2               runDESeq2
runEdgeR                runEdgeR
runHeatmap              runHeatmap
runLimma                runLimma
run_pca                 run_pca
saveQCPlot              saveQCPlot
scatterZoom             scatterZoom
selectBatchEffect       selectBatchEffect
selectConditions        selectConditions
selectedInput           selectedInput
setFilterParams         setFilterParams
showObj                 showObj
startDEBrowser          startDEBrowser
textareaInput           textareaInput
togglePanels            togglePanels
volcanoPlot             volcanoPlot
volcanoZoom             volcanoZoom
whitelist               Whitelist check
