dagLogo {dagLogo} | R Documentation

## plot sequence logo for test results

### Description

plot sequence logo for test results

### Usage

    dagLogo(testDAUresults, type=c("diff", "zscore"), pvalueCutoff=0.05, namehash=NULL,
                        font="Helvetica-Bold", textgp=gpar(), legend=FALSE,
                        labelRelativeToAnchor=FALSE,
                        labels=NULL)

### Arguments

`testDAUresults` | output of `testDAU`, should be an object of testDAUresults
`type` | "diff" or "zscore"
`pvalueCutoff` | pvalue cutoff for logo plot
`namehash` | the hash table to convert rownames of test results to a single letter to be plotted in the logo
`font` | font for logo symbol
`textgp` | text parameter
`legend` | plot legend or not, default false.
`labelRelativeToAnchor` | plot label relative to anchor or not, default false.
`labels` | the labels in each position.

### Value

none

### Author(s)

Jianhong Ou

### See Also

`nameHash`

### Examples

        data("seq.example")
        data("proteome.example")
        bg <- buildBackgroundModel(seq.example, proteome=proteome.example, permutationSize=10)
        t <- testDAU(seq.example, bg)
        dagLogo(t)

[Package dagLogo version 1.16.1 Index]