Package: coMET
Type: Package
Title: coMET: visualisation of regional epigenome-wide association scan
        (EWAS) results and DNA co-methylation patterns
Version: 1.10.2
Date: 2017-11-21
Author: Tiphaine C. Martin [aut,cre], Thomas Hardiman [aut], Idil Yet [aut],
        Pei-Chien Tsai [aut], Jordana T. Bell [aut]
Authors@R: c(person("Tiphaine C.","Martin", role=c("aut","cre"),email="tiphaine.martin@kcl.ac.uk"),
       person("Thomas","Hardiman",role=c("aut")),
       person("Idil","Yet",role=c("aut")),
       person("Pei-Chien","Tsai",role=c("aut")),
       person("Jordana T.","Bell",role=c("aut")))
Maintainer: Tiphaine Martin <tiphaine.martin@kcl.ac.uk>
Description: Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.
Depends: R (>= 3.1.0), grid, utils, biomaRt, Gviz, psych, ggbio,
        trackViewer
Suggests: knitr, RUnit, BiocGenerics, BiocStyle
Imports: colortools, hash, grDevices, gridExtra, rtracklayer, IRanges,
        S4Vectors, GenomicRanges, ggplot2, stats, corrplot
License: GPL (>= 2)
URL: http://epigen.kcl.ac.uk/comet
biocViews: Software, DifferentialMethylation, Visualization,
        Sequencing, Genetics, FunctionalGenomics, Microarray,
        MethylationArray, MethylSeq, ChIPSeq, DNASeq, RiboSeq, RNASeq,
        ExomeSeq, DNAMethylation, GenomeWideAssociation
VignetteBuilder: knitr
NeedsCompilation: no
Repository: Bioconductor
Packaged: 2017-11-22 01:37:41 UTC; biocbuild
Built: R 3.4.2; ; 2017-11-22 04:14:43 UTC; windows
