greedycut.filter.matrix {RnBeads} | R Documentation

## greedycut.filter.matrix

### Description

Performs all iterations of the Greedycut algorithm for removing rows and columns from the given matrix.

### Usage

    greedycut.filter.matrix(mm, rows2ignore = integer(), rc.ties = "row")

### Arguments

`mm` | Numeric matrix to filter.
`rows2ignore` | `integer` vector containing indices of rows in `mm` to be ignored by this function.
`rc.ties` | Flag indicating what the behaviour of the algorithm should be in case of ties between values of rows and columns. The value of this parameter must be one of `"row"`, `"column"` or `"any"` (the last one indicating random choice).

### Value

Table summarizing the iterations of the algorithm in the form of a `data.frame` with the following columns : Index, Type, Score, Normalized score, Rows, Columns.

### Author(s)

Yassen Assenov

### See Also

`greedycut.get.submatrix` for extracting the resulting matrix after filtering

[Package RnBeads version 1.10.8 Index]