rnb.execute.tnt {RnBeads} | R Documentation

## rnb.execute.tnt

### Description

export RnBSet to various output data formats

### Usage

    rnb.execute.tnt(rnb.set, out.dir, exp.bed = rnb.getOption("export.to.bed"),
      exp.trackhub = rnb.getOption("export.to.trackhub"),
      region.types = rnb.getOption("export.types"), ...)

### Arguments

`rnb.set` | `RnBSet` object
`out.dir` | output directory.
`exp.bed` | A character vector indicating which data types should be exported to UCSC. Possible values in the vector are `bigBed` and `bigWig`. If `NULL`, UCSC export is disabled
`exp.trackhub` | file types which should be exported to a trackhub structure.
`region.types` | a character vector indicating region types to be exported
`...` | Arguments passed to `rnb.export.to.trackhub`

### Value

a list containing information on the export

### Author(s)

Fabian Mueller

### Examples

    library(RnBeads.hg19)
    data(small.example.object)
    logger.start(fname=NA)
    rnb.execute.tnt(rnb.set.example,tempdir())

[Package RnBeads version 1.10.8 Index]