referenceSequences {R453Plus1Toolbox} | R Documentation

## Access the reference sequences of an AVASet

### Description

This function give access to a slot of an instance of the AVASet storing information about all reference sequences of the amplicons.

### Usage

    referenceSequences(object)

### Arguments

`object` | An `link{AVASet-class}` object.

### Value

The data is stored in an object of class `AlignedRead` and thus gives information about all reference sequences and their position on a chromosome (if `alignShortReads` has been called before).

### Author(s)

Christoph Bartenhagen

### See Also

`alignShortReads`

### Examples

        # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
        data(avaSetExample)

        referenceSequences(avaSetExample)

[Package R453Plus1Toolbox version 1.28.1 Index]