tabular_module {Mirsynergy} | R Documentation

## Generate tabulated module assignments and nodes for input to Cystoscape.

### Description

Generate tabulated module assignments and nodes for input to Cystoscape.

### Usage

    tabular_module(V, W, H, outdir)

### Arguments

`V` | Output from `mirsynergy`.
`W` | An N by M edge weight matrix containing interaction strength between N mRNA and M miRNA.
`H` | An N by N edge weight matrix containing the binary interaction among the N mRNA (genes).
`outdir` | Path to save the nodes and edges files.

### Value

`nodes` | data.frame containing edges in each indexed module. Each edge (row) contain the edge weights, the edge type (MMI or GGI), and which module they belong to.
`edges` | data.frame containing nodes in each indexed module. Each node (row) contain the node name, type (mRNA/miRNA), and which module they belong to.

### Author(s)

Yue Li

### Examples

    load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))

    tabular_module(V,W,H)

[Package Mirsynergy version 1.14.1 Index]