plot_modules {Mirsynergy} | R Documentation

## Plot module assignments.

### Description

Plot as network graphical view of the output from `mirsynergy` `V`. NB: small network only.

### Usage

    plot_modules(V, W, H, legend.pos = "topright", ...)

### Arguments

`V` | Outputs from `mirsynergy`
`W` | An N by M edge weight matrix containing interaction strength between N mRNA and M miRNA.
`H` | An N by N edge weight matrix containing the binary interaction among the N mRNA (genes).
`legend.pos` | Specify legend position
`...` | Other parameters passed to `plot`

### Details

Each node will be coloured by the modules they belong to. If a node belongs to multiple modules, it will be coloured differently based on the exact combination of the module indexes. The legend displays the corresponding colours and module assignments.

### Note

Only for small network. For large network please use `tabular_module` to create a pairwise table as input to Cytoscape.

### Author(s)

Yue Li

### Examples

    load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))

    plot_modules(V,W,H)

[Package Mirsynergy version 1.14.1 Index]