Package: FunciSNP
Type: Package
Title: Integrating Functional Non-coding Datasets with Genetic
        Association Studies to Identify Candidate Regulatory SNPs
Version: 1.22.0
Date: 2013-01-19
Author: Simon G. Coetzee <simon@simoncoetzee.com> and Houtan Noushmehr, PhD <houtan@usp.br>
Maintainer: Simon G. Coetzee <simon@simoncoetzee.com>
biocViews: Infrastructure, DataRepresentation, DataImport,
        SequenceMatching, Annotation
Depends: R (>= 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,
        FunciSNP.data
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
        GenomicRanges, Rsamtools (>= 1.6.1), rtracklayer (>= 1.14.1),
        ChIPpeakAnno (>= 2.2.0), VariantAnnotation, plyr, snpStats,
        ggplot2 (>= 0.9.0), reshape (>= 0.8.4), scales
Suggests: org.Hs.eg.db
Enhances: parallel
Description: FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions. 
License: GPL-3
URL: http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
LazyData: yes
NeedsCompilation: no
Packaged: 2017-10-31 00:23:38 UTC; biocbuild
Built: R 3.4.2; ; 2017-10-31 04:50:36 UTC; windows
