featureAlignedDistribution {ChIPpeakAnno} | R Documentation

## plot distribution in given ranges

### Description

plot distribution in the given feature ranges

### Usage

    featureAlignedDistribution(cvglists, feature.gr,
                               upstream, downstream,
                               n.tile=100, zeroAt, ...)

### Arguments

`cvglists` | Output of featureAlignedSignal or a list of SimpleRleList or RleList
`feature.gr` | An object of GRanges with identical width. If the width equal to 1, you can use upstream and downstream to set the range for plot. If the width not equal to 1, you can use zeroAt to set the zero point of the heatmap.
`upstream, downstream` | upstream or dwonstream from the feature.gr.
`zeroAt` | zero point position of feature.gr
`n.tile` | The number of tiles to generate for each element of feature.gr, default is 100
`...` | any paramters could be used by matplot

### Value

invisible matrix of the plot.

### Author(s)

Jianhong Ou

### See Also

See Also as featureAlignedSignal, featureAlignedHeatmap

### Examples

      cvglists <- list(A=RleList(chr1=Rle(sample.int(5000, 100),
                                          sample.int(300, 100))),
                       B=RleList(chr1=Rle(sample.int(5000, 100),
                                          sample.int(300, 100))))
      feature.gr <- GRanges("chr1", IRanges(seq(1, 4900, 100), width=100))
      featureAlignedDistribution(cvglists, feature.gr, zeroAt=50, type="l")

[Package ChIPpeakAnno version 3.12.7 Index]