# Predicting binding site consensus from ranked DNA sequences

## Documentation for package ‘BCRANK’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bcrank | BCRANK: predicting binding site consensus from ranked DNA sequences
BCRANKmatch | Class "BCRANKmatch"
BCRANKmatch-class | Class "BCRANKmatch"
BCRANKout | BCRANK results for USF1 ChIP-chip data
BCRANKresult | Class "BCRANKresult"
BCRANKresult-class | Class "BCRANKresult"
bcrankScore | Class "BCRANKmatch"
BCRANKsearch | Class "BCRANKsearch"
BCRANKsearch-class | Class "BCRANKsearch"
consensus | Class "BCRANKmatch"
fname | Class "BCRANKresult"
matchingSites | Report IUPAC consensus occurrences in a fasta file
matchVector | Class "BCRANKmatch"
plot-method | Class "BCRANKsearch"
pwm | Class "BCRANKsearch"
searchPath | Class "BCRANKsearch"
toptable | Class "BCRANKresult"