seqTools-package	seqTools-package
ascii2char	ascii2char
cbDistMatrix	cbDistMatrix
cbDistMatrix,Fastqq-method	cbDistMatrix
cbDistMatrix-methods	cbDistMatrix
char2ascii	ascii2char
collectDur	collectDur
collectDur,Fastqq-method	collectDur
collectDur-methods	collectDur
collectTime	collectDur
collectTime,Fastqq-method	collectDur
collectTime-methods	collectDur
countDnaKmers	countDnaKmers
countFastaKmers	countFastaKmers
countGenomeKmers	countGenomeKmers
countSpliceKmers	countSpliceKmers
fastqKmerLocs	fastqKmerLocs
fastqKmerSubsetLocs	fastqKmerSubsetLocs
fastqq	fastqq
Fastqq-class	Fastqq-class
fileNames	Fastqq-class
fileNames,Fastqq-method	Fastqq-class
fileNames-methods	Fastqq-class
gcContent	Fastqq-class
gcContent,Fastqq-method	Fastqq-class
gcContent-methods	Fastqq-class
gcContentMatrix	gcContentMatrix
gcContentMatrix,Fastqq-method	gcContentMatrix
gcContentMatrix-methods	gcContentMatrix
getGCcontent	gcContentMatrix
getGCcontent,Fastqq-method	gcContentMatrix
getGCcontent-methods	gcContentMatrix
getK	Fastqq-class
getK,Fastqq-method	Fastqq-class
getK-methods	Fastqq-class
kmerCount	Fastqq-class
kmerCount,Fastqq-method	Fastqq-class
kmerCount-methods	Fastqq-class
kMerIndex	kMerIndex
maxSeqLen	Fastqq-class
maxSeqLen,Fastqq-method	Fastqq-class
maxSeqLen-methods	Fastqq-class
meltDownK	meltDownK
meltDownK,Fastqq-method	meltDownK
meltDownK-methods	meltDownK
mergedPhred	mergedPhred
mergedPhred,Fastqq-method	mergedPhred
mergedPhred-methods	mergedPhred
mergedPhredQuantiles	mergedPhred
mergedPhredQuantiles,Fastqq-method	mergedPhred
mergedPhredQuantiles-methods	mergedPhred
mergeFastqq	mergeFastqq
mergeFastqq,Fastqq-method	mergeFastqq
mergeFastqq-methods	mergeFastqq
nFiles	Fastqq-class
nFiles,Fastqq-method	Fastqq-class
nFiles-methods	Fastqq-class
nNnucs	Fastqq-class
nNnucs,Fastqq-method	Fastqq-class
nNnucs-methods	Fastqq-class
nReads	Fastqq-class
nReads,Fastqq-method	Fastqq-class
nReads-methods	Fastqq-class
nucFreq	Fastqq-class
nucFreq,Fastqq-method	Fastqq-class
nucFreq-methods	Fastqq-class
phred	Fastqq-class
phred,Fastqq-method	Fastqq-class
phred-methods	Fastqq-class
phredDist	phredDist
phredDist,Fastqq-method	phredDist
phredDist-methods	phredDist
phredQuantiles	Fastqq-class
phredQuantiles,Fastqq-method	Fastqq-class
phredQuantiles-methods	Fastqq-class
phredTable	phredTable
plotGCcontent	plotGCcontent
plotGCcontent,Fastqq-method	plotGCcontent
plotGCcontent-methods	plotGCcontent
plotKmerCount	plotKmerCount
plotKmerCount,Fastqq-method	plotKmerCount
plotKmerCount-methods	plotKmerCount
plotMergedPhredQuant	mergedPhred
plotMergedPhredQuant,Fastqq-method	mergedPhred
plotMergedPhredQuant-methods	mergedPhred
plotNucCount	plotNucCount
plotNucCount,Fastqq-method	plotNucCount
plotNucCount-methods	plotNucCount
plotNucFreq	plotNucFreq
plotNucFreq,Fastqq-method	plotNucFreq
plotNucFreq-methods	plotNucFreq
plotPhredDist	phredDist
plotPhredDist,Fastqq-method	phredDist
plotPhredDist-methods	phredDist
plotPhredQuant	plotPhredQuant
plotPhredQuant,Fastqq-method	plotPhredQuant
plotPhredQuant-methods	plotPhredQuant
probeLabel	Fastqq-class
probeLabel,Fastqq-method	Fastqq-class
probeLabel-methods	Fastqq-class
probeLabel<-	Fastqq-class
probeLabel<-,Fastqq-method	Fastqq-class
probeLabel<--methods	Fastqq-class
propPhred	propPhred
propPhred,Fastqq-method	propPhred
propPhred-methods	propPhred
revCountDnaKmers	revCountDnaKmers
seqLen	Fastqq-class
seqLen,Fastqq-method	Fastqq-class
seqLen-methods	Fastqq-class
seqLenCount	Fastqq-class
seqLenCount,Fastqq-method	Fastqq-class
seqLenCount-methods	Fastqq-class
seqTools	seqTools-package
simFastqqRunTimes	simFastqqRunTimes
sim_fq	sim_fq
trimFastq	trimFastq
writeFai	writeFai
writeSimContFastq	writeSimContFastq
writeSimFastq	writeSimFastq
[,Fastqq-method	Fastqq-class
[-methods	Fastqq-class
